Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10001843 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10001843 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15111
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (46.15%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15111

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (46.15%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F013525	Metagenome / Metatranscriptome	270	Y
F018712	Metagenome / Metatranscriptome	233	Y
F024771	Metagenome	204	N
F031868	Metagenome	181	N
F032656	Metagenome / Metatranscriptome	179	Y
F040475	Metagenome	161	N
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000184311	F050330	AGGA	MANETTSSTLSKLYTNKTKVKGTYRVYKPKPLKQTKKK*
Ga0114980_1000184315	F040475	AGAAG	VPHNKVCLAVIRSITNKSYNEIGKHYKKSWFSIYASVKDCQKNGLKAFTNKVIALVKEDIK*
Ga0114980_1000184329	F031868	N/A	MEKTMRTVKQEIERLFLESKKHPHIVQTYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQQWKETWIEKN*
Ga0114980_100018433	F018712	N/A	VKQMCERKKPKMLDRKMRGSHDLEIRLYDLMKQADFNQEEIQRLNLIIKKLEEDLEKHLRSTN*
Ga0114980_1000184333	F010247	AGGAG	MNVQGTVKYVFDNRLGKDGSPNKFPNYKFKINENEIVLWSAIRPAFLEKGRNISVTCQASKKNGSLFVMTREDKSPMIQELPSNSSAEAKPDVSFNVDDFETESFNTAVTTIQREMGSSQVAPKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFNN*
Ga0114980_1000184335	F013525	AGG	MTDLSLKNPDEIKQELDTCSEELAHALYEFRRCEEFKKITFSQIALTYKLDKNCSVAESEKYAYCDNNYKIIIEGLLVAEKQYSIARGKYSNLQSWVDLYRSWLVTQRDLSK*
Ga0114980_1000184336	F024771	GAG	MNEKKYINNFNHQSYEVRSKNYKNISEDRFEHYCIDRGYCFTKLSLNSVTSSQSFADSVIPMFSKLPLIYKSQADYFIYKSKEEHEKSDNKEKCQWFVELKNATYEHGKTLAKIKVRDLKRYIYFEQGYTNQYTRFTICFPLNDKIIFKSVDQILKALPKAELKKFPNDNIEYFEIQLS*
Ga0114980_1000184337	F032656	N/A	MNFYLVTYAVSFVKVKSENFKEEVTHVRFFDTDNFANACSFLSSLKKVKKLRITGVEWELEECSWFDYYDDVSNTIN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10001843

Overview

Ecosystem & Geography

Associated Families

Sequences