| Basic Information | |
|---|---|
| Taxon OID | 3300009152 Open in IMG/M |
| Scaffold ID | Ga0114980_10001491 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16828 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (60.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F006543 | Metagenome / Metatranscriptome | 370 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F012108 | Metagenome / Metatranscriptome | 283 | Y |
| F035281 | Metagenome / Metatranscriptome | 172 | Y |
| F057320 | Metagenome / Metatranscriptome | 136 | Y |
| F061803 | Metagenome / Metatranscriptome | 131 | Y |
| F086678 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114980_100014912 | F012108 | GGA | MIKVEMSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRRMVTITGGLTLDNRIHSIKAIRLHTGWGLKEAKDWTDYLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLVGLGCEGFLS* |
| Ga0114980_1000149124 | F061803 | AGGAG | MEVELSKQEAWKILDAISAYKEDYTVTGAVSKTYDNITKKLKEVVKE* |
| Ga0114980_1000149127 | F035281 | AGGAG | MKNVILMIALATVCSTGYAGECANGSCSLRSRAVNVTREIVAVPVAVTRRTVEATRNVGRRTVARVRSVVR* |
| Ga0114980_100014913 | F006543 | GGAG | MKKFSFVIDVVADELDRDSVVDSIRDCLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETAEVVA* |
| Ga0114980_100014916 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH* |
| Ga0114980_100014917 | F057320 | N/A | LKGIIMSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFESEKEAKFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGELTAHGYLTEVARPMPECHDDEYCDGECFQSECKNGQMIQFVVDKLDSMGLSYNDAHKGNFGYIRRKGKWVAVVIDLGIESFTEWDEDIYGQFDYDADEDVDCYGVCNCVHCQKVRQNLQD* |
| Ga0114980_100014918 | F086678 | AGGA | MSKYYIKSGTLELIYSCNKCPRDAAMDAIWETNENDTLDEFIYLDERGYKNYTNADGLTCVLHTSHILKDAGWSIE* |
| Ga0114980_100014919 | F008812 | GAGG | MIQWVGILIAVLGLAYNGVKDYQKGDIKLSRLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWHDYAPQQRRYEATPQPYQDQGKTAVASSYGSQGTPSHRYGQSPQANPNPIR* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |