Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000580 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000580 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26473
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (67.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

26473

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (67.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F004010	Metagenome / Metatranscriptome	457	Y
F012569	Metagenome / Metatranscriptome	279	N
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N
F078641	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000058015	F000635	GAGG	MTLTEIAQYAGEKIGKTDSDTLNFLQKSASLNYRRVWNFAPWRESITNSTYSVSTGTRTVSLGSLVENPLSVAYGDSELMSVDLQTIVSQDADLLDSDRTGTPSQYYFKGRNTSGTAEIDLYPLLNTTSTTTLKVIEKVTCITRQNNIVDFPPSSAAITDELRLPHVQHVVLALTHADALERERQYAKAQAVVSSANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV*
Ga0114980_1000058017	F002149	AGAAG	MTAIEYIEASGVPEGMWHNLADWFRWFERQGMVGIVEDSDGIAGVALARCLKEGQKPDHYVHSEDGDNVFVDLTVSSKGAISLRCLLLLLWERFGIRKRITFNRSGKPRSYDYMTFMRKAFIGSKL*
Ga0114980_100005803	F012569	N/A	MSADTDRFGARNGFTVGTASVAGSGYWAIQMLADTTFSAISGNYDGTLTGITIGSGNIIYGEFNSFTAGTGRVIAYKG*
Ga0114980_1000058030	F068578	N/A	MEAIDSLGTAVRELQEGLPVREHTEPTIEDVATHASTVIRKIMSRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDGSGETCIDHLERALVRAVFTLYKAKEGKIH*
Ga0114980_1000058033	F056556	AGAAG	MEESSKRWDANLVVIKPENPIGLLAKMSLVDAVQNSDRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQLHWGRANEMILSQAMLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP*
Ga0114980_1000058039	F004010	AGGA	MPLGKNVSKNMRELIKDNKKKGKERGAGGKARSFEQMVAIALRSAGKSKNR*
Ga0114980_100005807	F003112	N/A	MKRIATWITVLGLRLLLTAKDYACFKEALKCAEDNNRLARGTKYIGAVKHLLSVNRSIKRMVDDGRDRDEVVGAVVHLAVSLKYLESRNE*
Ga0114980_100005808	F078641	GGAG	MSEDQVWGIEVKLARMEERQVQLYQMVETSLSNYADVVNRVSALEHLRSRIFAIAGVAGLLFSVAWDLVKNRMNH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000580

Overview

Ecosystem & Geography

Associated Families

Sequences