| Basic Information | |
|---|---|
| Taxon OID | 3300009151 Open in IMG/M |
| Scaffold ID | Ga0114962_10002450 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15476 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (57.58%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012113 | Metagenome / Metatranscriptome | 283 | Y |
| F041645 | Metagenome | 159 | Y |
| F049401 | Metagenome | 146 | N |
| F060551 | Metagenome | 132 | N |
| F063298 | Metagenome | 129 | N |
| F074409 | Metagenome | 119 | N |
| F086801 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114962_1000245017 | F074409 | N/A | MKSPLPARPVACASNVYGKEYADYIHQPKANGWRFLFDQATGLVMNRHGVKAKNSELVLERLKGIEIKARYIDGEIMGMRTRSAKGTIILIDAFDPANPLPISERLKLIEEIEPASYEVKANALLRMPRLDHDKLKACWAEMDYQNQKAGEVVWEGFVSKDDQKYPWISNPSYCSPEWHKMRIRW* |
| Ga0114962_100024502 | F063298 | AGGA | MSDKQTGIELKKTITLLEKAKSETVEHMGECISLAADAGDIIASARKEDADLDTILSIAGINGEQARRLERVAKARPTLSAPAPGQLKQLALWAGILPDPIENSTPRPERAWHHYIVLAKQWIAKKVVDQWSPEQRSEFIDEARPIAQAYKDAGGEL* |
| Ga0114962_1000245022 | F086801 | N/A | MTGVKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQVKIILELARLGMEDEDLCATTARDSCKRIFDMMGGIK* |
| Ga0114962_1000245024 | F049401 | GGAG | LELFIGGLKIVQRLGQKETMQKLNIAVGFAMLTLILGGVLVLSSCASTSYNYTAPAPADIPALIMEWDKLERSLGQVKPEFREQYAKALKALSNAIAEEERWRSRAENK* |
| Ga0114962_1000245025 | F012113 | N/A | MQQILTFIQSQDIFAWVGAVVALLSAVIAIASLIPGDQPEKFLQSVVDVLSKFSKK* |
| Ga0114962_1000245030 | F041645 | N/A | MATTIIGSAINTKVLKRQNFNKEINGLETLIEAYAIKTSNRVSVVPAKDTLHSAFSSASTTYTRMAVESVATEEEDGGITSMIVTYVGLTSSTGLPPAVVRLIPTAGAGVYGPPLVIEVEFVTDVTESQFASGQQATTNPAAYSGGWTTFIPMPASINGTALPVNIRKPFNNNGLVIERYYGYCADSFSCERRGLFLVAKNIYAEKQEIATIS* |
| Ga0114962_100024504 | F060551 | GGCGG | MKTDGQDPADSIRASYTPDMAETIDTLEDQMRERLSQMQAMNPALGLDQLAKMLTQIVEETVSSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFMNPSTGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |