| Basic Information | |
|---|---|
| Taxon OID | 3300009151 Open in IMG/M |
| Scaffold ID | Ga0114962_10000419 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37837 |
| Total Scaffold Genes | 66 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (69.70%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F001459 | Metagenome / Metatranscriptome | 690 | Y |
| F002009 | Metagenome / Metatranscriptome | 604 | Y |
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F002826 | Metagenome / Metatranscriptome | 527 | Y |
| F003304 | Metagenome | 494 | N |
| F004010 | Metagenome / Metatranscriptome | 457 | Y |
| F010449 | Metagenome / Metatranscriptome | 303 | N |
| F012569 | Metagenome / Metatranscriptome | 279 | N |
| F014827 | Metagenome / Metatranscriptome | 259 | Y |
| F020665 | Metagenome / Metatranscriptome | 222 | Y |
| F022371 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114962_1000041914 | F012569 | AGGA | MSRALDKFQGQYGFSVGSTGTATAGYWAIQMLTDTTFSAISGRYYGTLTGVTIGSGNIIYGEFNSYTAGTGTVIGYIAG* |
| Ga0114962_1000041917 | F010449 | GGGGG | MSEEQVWNMEVRLARMEERQLQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLFN* |
| Ga0114962_100004192 | F014827 | N/A | VLRAILEIIAAVFRIIPGWQQKRTQNAESEWRENRKAIERDLRGESWWLRNNDTSDTHNRDS* |
| Ga0114962_1000041921 | F000635 | N/A | MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGIAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQTALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQIANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA* |
| Ga0114962_1000041923 | F002149 | N/A | MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGVVEDKDGIAGVALARCIKDGQEPNHYVHSEEGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV* |
| Ga0114962_1000041937 | F002009 | GGA | MTAPTIQEMGNASQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL* |
| Ga0114962_1000041939 | F003304 | N/A | MKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSTDFILIDKTLTHPPQYSKSAIGNIMATKHYDQVTFVDADVLITADCPKLSDDAGLFCAFDEGAFLDRKPEMVKLAGAFGGVIEPKFYVNTGVFIVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKADDAKLVELGR* |
| Ga0114962_1000041941 | F022371 | AGGA | MFCLLDLGAIVWVIASFILYSSMTLSAIYCALYIIFKLIDFIRKELDL* |
| Ga0114962_1000041942 | F020665 | AGGA | MKKKNRKITLVKTSEQTAVRVIVDIDDDLYEALAKAGRHHLAKDKMACFEYALNKALLELCEELK* |
| Ga0114962_1000041945 | F004010 | AGGAG | MLGKDVSKNMHELAMDNKKKGKARGAGGTPRSHKQMIAIALSAAGKSKPRKFRMRSGS* |
| Ga0114962_1000041946 | F002826 | N/A | MQVEAKARLKWGRDILLIARDKLAIERDRATHGRVIDIIQIITMVDAATLIAKELIESE* |
| Ga0114962_100004197 | F001459 | AGG | VRKLKAVLAFIRNQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNSSAVMKKSEALADACGYAKGFRGCVATLESLATQKLNSAIPGYGDGSDEPVAD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |