NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114918_10052279

Scaffold Ga0114918_10052279


Overview

Basic Information
Taxon OID3300009149 Open in IMG/M
Scaffold IDGa0114918_10052279 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2736
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F047104Metagenome / Metatranscriptome150Y
F091857Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114918_1005227910F047104N/ATEIRRYAADKRKRQAKRDTFTLNGNTYTVSNDPKHQADQLAGYQGRNPK*
Ga0114918_100522795F091857AGTAGMKKIISLVGAICLSGCVVTEKEVVYKKISFADKKGVTTLYYPPKWQKFLKPIDDGTPKTMLVRFGETLNAQTE*
Ga0114918_100522798F007550GAGGMKKIISLLLLVGAVSTNAASLELKVMQQKTLPNGNAYGLESGIYFELTDLEPFIMYKLQYSEDLDKWTDLVHLGTYKMAMTSPYWTWKELPPYQCFFRIVVAW*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.