NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114918_10001142

Scaffold Ga0114918_10001142


Overview

Basic Information
Taxon OID3300009149 Open in IMG/M
Scaffold IDGa0114918_10001142 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23592
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002779Metagenome / Metatranscriptome530Y
F087203Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0114918_1000114215F087203GAGGMIITREIKVKINEANYSYYENLGYSDVTIGELLIIPVELLSKGSHYKIKCKCDKCGIEKDVIFKNYVKYDNKWGEYFCRKCSESKRKKSLRENYGVDYPIQNNKVLNKMKKTLIDKYGVDNISKRDNKQNDIS*
Ga0114918_100011423F002779N/AMKNLKLELFNFKKNLSLDQEDVAIIIEGHMNACNEHAEKAIINSLNEKLKAYTYDGSVKGLLESLNDDMSNHELIYELKSLYNVLNTKNQGELYRQPINVLLQTINLESDQDRMSKVLNELAIYDWVPEIKVFVHNLTKSPEQRTNLLSGGSGESVFTIVEAVEDGHVALIKDSWFLLTENVIEKTLLENHVKNEEDLKSLRMIESAMKFATINEDRVNFRVSEYLTIGLSVGKKGGIFINDDELNEETTLESLFSSPIVPIVNKNFYPILLEVSQNMDKFVELDVVKKINNLINPYLECFAFNYKNTTFLYRCDERYGNSFFKYESAIELVNEVRNELNYDLTYFYENKLDSELIVKRKLEDKEREITLKLEDVNFNIEKVKGSIQMIGESEVLSTALANLEKRKTNLDGELLGVKELQYKEVTKL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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