Basic Information | |
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Taxon OID | 3300009149 Open in IMG/M |
Scaffold ID | Ga0114918_10000524 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33250 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (7.41%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031473 | Metagenome / Metatranscriptome | 182 | N |
F044507 | Metagenome / Metatranscriptome | 154 | N |
F055734 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114918_1000052432 | F044507 | N/A | MTKDYKHLKLIIGDYKKIIVTGPHGAGNKIATKIISHDFKLEEKRGEDAWSLDGYNDDDGLLKFYDKNKDNKFVSFGPSQSCHLHRINNTLKDVLVVFMYKDMSTIERYSERNPFVKEQSHKYEWSVYNQMVMEDFPHSATYLSKSIEQLTYHIWENHQRELVPNWIELNHSSLEGHELWVNKEDRKDFTEQQTKI* |
Ga0114918_1000052434 | F055734 | N/A | MERKRLIENIEREDVWDKYKYVYADRLLKEYDSESVRKYLRNKSKTTGDYYYCSILKETNNGEEYS* |
Ga0114918_100005244 | F031473 | N/A | MEEIRELIEKSFTPRVEEDMNGIKVIFTSTVGDGTIWFEPAKRGWSNKPLSTNRYIIVDAELSHVLTFLNRYYQLDESNYHDIRRMFIDIGMDTVDKHTKGEPNE* |
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