NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066709_100715071

Scaffold Ga0066709_100715071


Overview

Basic Information
Taxon OID3300009137 Open in IMG/M
Scaffold IDGa0066709_100715071 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1442
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001935Metagenome / Metatranscriptome615Y
F012223Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0066709_1007150711F001935N/AVYLRYLSSLEFFTYTAFLAIVVGAISSLLPGRKPPLRTEPYSESELAAHDRRLAKYFVAGGFFLVLGSLHMVVKNVPWIAESLARMGYAGHLVRDLSSTHVMIVGGGTLLATGLCWRVLPRIVGRPLTSEALAQ
Ga0066709_1007150712F000280GGAMSQSPESPRPGRPLVGYRDTGTEEDVRYSRSAVTRAWIILAVIALVYLGWTLTVYFLEPGLR*
Ga0066709_1007150714F000805AGGAGGMTLVPTSIPSGESPFKAQQYYHYLQAHQETQYHPDTWHIRWLDLAWLWGFVGALAIVLLLWIWQYRSTRQRIHPVDTFGGVTTEMARPATMFFILLAVGLAAFAVAIIVGHIVWGQKF*
Ga0066709_1007150715F012223N/AAGLALVAFLAAWKAGHFHELDQVGSIPLYIEEEDYYTPEWALDEEAWQE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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