Scaffold Ga0115026_10076506

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115026_10076506

Scaffold Ga0115026_10076506

Overview

Basic Information
Taxon OID	3300009111 Open in IMG/M
Scaffold ID	Ga0115026_10076506 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1959
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location Name	Old Woman Creek National Estuarine Research Reserve, Ohio, USA
Coordinates	Lat. (^o)	41.2239	Long. (^o)	-82.3039	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047751	Metagenome	149	Y
F072485	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115026_100765061	F047751	AGGAGG	MPKKKQEELPAELKGSIDDYYLEMSPEIMELIHSWLYRIVDAAYQGISELPSEHRDAMLMKMSKACSDQAKMVLDCKPGMSWEAYKKHMGALQPPFGPRKITQVGDIVHWTYVPPKDKKGKPICQCPLAMYGMMKGRPELCGCSANSVRAYIEEYTNKKVDSVETLGSPQVDGTDECRFLVHLKPSRFTTAKPDGIPVKKAKAGAR
Ga0115026_100765062	F072485	GGA	MGSDYLPEMEQNGLRLVGMFMMGIHYNENLALWELDGWATLDRIQKVYDKHPWLKVWKREAVDYVTDFVGKVLEPAPFSPTLAKLKKGDYKATIYLHTLSKVYPGKEDEYMDAVGKELKPMAQRWGMNLVGCYKSVAGTAGSGEVINIWTAGNVHSDWVKIRDISLKDLAYKRWEAKAGKWRPKVVYRFLYGLVPYSPLRTPFLQEAVVEEVRTVAMPEVEWK*

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