Scaffold Ga0075418_10756725

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075418_10756725

Scaffold Ga0075418_10756725

Overview

Basic Information
Taxon OID	3300009100 Open in IMG/M
Scaffold ID	Ga0075418_10756725 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1048
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000640	Metagenome / Metatranscriptome	967	Y
F029149	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075418_107567251	F029149	GGAG	VLPPAIPLALGATLLHAAADTVPTLNVEPGCRAAAKMGD
Ga0075418_107567253	F000640	N/A	MMSMKMSIGNPAVHRLQAVLVLTAGLFALFVSSPAHAQYACTTNYCIRSQSTSVQTPPGWPAVPMETCCQTHWGALPGGIDWSNGSPVMICTATPEYVTAFPNCGGPQNLSQAFPLDYDRPRISIGVAWPNPNNYRYEMQSVPILDGPDGTCSQYSQQPGKVTNWWVYDLKEPKRGSYVFTASVSFQRGEKGYYAVLNGCKLQPPSSTATE*

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