NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105245_10319212

Scaffold Ga0105245_10319212


Overview

Basic Information
Taxon OID3300009098 Open in IMG/M
Scaffold IDGa0105245_10319212 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1530
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062979Metagenome130Y
F064147Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0105245_103192122F064147GAGMNRRELFQNILTAGAAIFAGGALRGQGITSYNGPEGGTRGTQLVTILGGPFHTSAEPNGVRPLTATPQFATYVRVQAHPGQQGKIAIGNSAMLTATGNIADFAFVELWPNWDGSTDNGRSDTWIIADPKWLNTINVADIYIWPEIAGETPLITAFQLV*
Ga0105245_103192123F062979AGGAGMLLLSPCAEAGPHTISDTPVPITTDSKLVNKLSIKPRLGQWSKVLIGGPGLLPDETNAMAVLYPVPNGGQADAFVLQDEGGQNTIDLSQIYIYATIPGDTPMVEAFEYKTL*
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