Scaffold Ga0111539_10046575

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111539_10046575

Scaffold Ga0111539_10046575

Overview

Basic Information
Taxon OID	3300009094 Open in IMG/M
Scaffold ID	Ga0111539_10046575 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5186
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002163	Metagenome / Metatranscriptome	588	Y
F047161	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_100465755	F002163	N/A	MMIQEAMNKAVEGGYHINGSDGMETSYLGANDEYSAWTRRDNDSSFMVPVEETFLDPRFWQALGRTLGWSEVCDLAIICVHGAEECQSCRGYYWMYQWHCFIQALAHGNPPEAFFARLTSSL*
Ga0111539_100465759	F047161	AGGAGG	MCGHEFMFHTRDHLQRHRPRWQCGTCGRVSSAPLDCCTRPDFVQHHSPELTHLLSAWIGRCGRWTLASVRLLWGWQRRSATRAGTPPATASPHSMSTGGVRLPPAEYDESPEGDDVMVAAGERQ*

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