NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115566_10067899

Scaffold Ga0115566_10067899


Overview

Basic Information
Taxon OID3300009071 Open in IMG/M
Scaffold IDGa0115566_10067899 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2362
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003219Metagenome / Metatranscriptome500Y
F032828Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0115566_100678993F032828AGGAMDLNKEGVLHLDLFDVETQEEQDQFIYYYLGLSRPVKKKFENAYYSLYNKKLLAEPEAQIIYTDLNGLTQIEVHPNDILKNLRMIKQLMLEGELSVDKPESKPHLVVVEDENE*
Ga0115566_100678994F003219AGGMDNQTVVVPHIEDDVPIPKNAKEALPNMSTQEELEARTNTIKMLADIQDENIEPSKENMEEAEILAEEMMANPELKPDFGSYPNETIAFLAGMVAQTSHMVAKDLADIKLTVLNGLLQEATMAKSSRERIAALKAVGEIDGVDAFKRKTEVTHITKSGDELEKELKKTIDELKGKIIHTREVVEVEDIEVDDD*

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