Basic Information | |
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Taxon OID | 3300009071 Open in IMG/M |
Scaffold ID | Ga0115566_10009956 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7263 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022080 | Metagenome / Metatranscriptome | 216 | Y |
F024647 | Metagenome / Metatranscriptome | 205 | Y |
F031507 | Metagenome / Metatranscriptome | 182 | Y |
F040113 | Metagenome / Metatranscriptome | 162 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115566_1000995610 | F040113 | N/A | MRLGYKKFKEIKKWYGSSDFEIGYDSYFTQGKGITLRFGYWQKVDFEGLKELLPQYCNITENIVDEDDDCGTLYNYNITDGRIY* |
Ga0115566_1000995611 | F022080 | N/A | MIKEMNLGLVKMNESKTELYGVQYYKSKWERNLGDTLTIDGEKWLVGIIGDTRNDVISALNDIVKKQNSIINKKKYQQRKEEKFIMNNILNNVMKDLNL* |
Ga0115566_1000995612 | F031507 | N/A | MLKVNDKIKFENKYGQIQEGIVTDNNYQCDFDADLNGCVRVSVDYGSSIIGTVNTLIDKSQILKNVKL* |
Ga0115566_100099569 | F024647 | N/A | MNYLVHPSNIVSRALGIDSFKQMINDEQVQFSELVHTSVQIAEEWTNDWDEGQGFGSSDGTYLLKDFIDTIISSYTKGYKTVFNPSLNIIKL* |
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