Basic Information | |
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Taxon OID | 3300009038 Open in IMG/M |
Scaffold ID | Ga0099829_10030487 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3840 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010414 | Metagenome / Metatranscriptome | 304 | Y |
F018640 | Metagenome / Metatranscriptome | 234 | Y |
F026070 | Metagenome / Metatranscriptome | 199 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099829_100304872 | F026070 | AGG | MAKRLRAWLAGGHECDLDLGEGSAQDLMEKIEKAGDRSWFSTAGGCSRVRASAIVRIEVEGRPDTPHDRVERRSS* |
Ga0099829_100304873 | F010414 | GAGG | MPESGLPIRVYEEHDMWHVDYGEGETEDHTSREQAEAAADAVAQAEERTVVVEE* |
Ga0099829_100304876 | F018640 | GAG | LDAAGGLLDAHIRLEERQLFPLIEQLVPDDELRRLGLASRDVTCAVRRPPLTS* |
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