| Basic Information | |
|---|---|
| Taxon OID | 3300009027 Open in IMG/M |
| Scaffold ID | Ga0102957_1002472 Open in IMG/M |
| Source Dataset Name | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6175 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South San Francisco, USA | |||||||
| Coordinates | Lat. (o) | 37.4971 | Long. (o) | -122.129 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F071194 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102957_100247212 | F071194 | GGAG | LASKFNYLEFIQQTHPLYSKYYDDWKLAVNSYYGGVSYREGKYLKAYDSDYSTPSEVINTYDVDEYGNQIAKHRTSVERVNSLSQAETGLQYASNFYQEKLQNVPVFPYTRLYCQEYSAILFRSPPSRELPETPEIDSFIEDVDGEGNSINEFMSMVDVFTTVFGIVWISCLKPSEAEYARWRMHKPTEVYNWAYTYNASGDLVLNKILIKVAEEPEFEVYQYITPEEIHTIFMPTGDDEDIADQMPEDAEYLEDDEGKGFYRIVQPNELGYIPVRPVYQSNKIQNGVGHTPIFDIAQIQRSVYSDMGEIYSAVSYGAHPVNLVDEETLNRNDNSVGAEPGSIIITQASLNGQPNYVYEFVAPPLDSITEIREMMDQKIEKMNQVAMIRSDELIKASRSGVQIEMYDSKLEAFIRKKATSMEQAEFNMWKIWFDWQDQDMPEDLAISYNRLYSQKGVENEIKEMNTLLDAYERYSSVFLEGVETYEAPEYSTQAEAEAEAQRLGGSGFHSHEEEDGTTVYMPFQT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |