NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_102471540

Scaffold Ga0066710_102471540


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_102471540 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F012223Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1024715401F001079AGAAGMADSVPLPSALPYVSWASETSAEIPAGDWELVYGSMQALKAHVQEYPGCQKLEAFIEPGADGSVHVHCYTVWDTPDHLDAFLERGYTFARML
Ga0066710_1024715402F000805AGGAGMGMPRGDTPEKARDYYLYLQGHQETLQRPATWHVHWLDLAWLWGFVIAIAVGVLLWLWQYRSTRQRGIYEADTFGGYTAELAGPATLFFIVFTVFVTGFAIVMIVGHIIWGQKF
Ga0066710_1024715403F012223N/AVAFLAAWKAGHFHELDCVGSIPLYIDEEDYYTPDWALDEEEWTDGNA
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