| Basic Information | |
|---|---|
| Taxon OID | 3300009001 Open in IMG/M |
| Scaffold ID | Ga0102963_1009680 Open in IMG/M |
| Source Dataset Name | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4126 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South San Francisco, USA | |||||||
| Coordinates | Lat. (o) | 37.4973 | Long. (o) | -122.1295 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001588 | Metagenome / Metatranscriptome | 667 | Y |
| F021057 | Metagenome / Metatranscriptome | 220 | Y |
| F024299 | Metagenome / Metatranscriptome | 206 | Y |
| F052534 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102963_100968010 | F001588 | AGGAG | MQKTNKVFLNAENAAIVVTVNNKVVATDVQTADALVQVFLTHNVNVLTDTIMCSSSIDFAAEENFATDACAHNIIDAALEALS* |
| Ga0102963_10096803 | F024299 | AGGAG | MQKANNTKIKNVTTHNTADNSVQLEICLADKNYTVNARAVESVTLYADADCYGDLAVNWEEEDDSNYVHNSSMLMRDTSDSNNNTATMGEFYWENCFATQLEAILLAAGFSTEAAADVCTSEWGMQDVGRASYDANCIAEEMLAAHNVQLEAA* |
| Ga0102963_10096807 | F052534 | AGGAG | MLKQKALTRNLIATLCTTSNTLFVHNNKTVKKAAFVYTLNAQKVVRNLNAQQQAAFNNLPATYMQNAKQFVINKLAQSTILKS* |
| Ga0102963_10096808 | F021057 | AGGAG | MQQLKTITKTKTKTVESVHADTVYAVIQNAYNSLQVIEADCTSASYFINSANIYAQLITLYASFADTTDYVALHKVMQCFANNITYYDESSLFTQAVENTAMQNVQLENYTYLSN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |