Scaffold Ga0102831

Basic Information
Taxon OID	3300008996 Open in IMG/M
Scaffold ID	Ga0102831_1001396 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008996 Open in IMG/M

Scaffold ID

Ga0102831_1001396 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10220
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10220

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2

Long. (^o)

-123.94

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F095350	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0102831_10013962	F017989	N/A	MATPALSQTCFVDLTPDQQNFNIYESLKQIAGFDIPEYDQIDITYYGSTNNIATVQYLKDGNPVATLTLTYAIQPPVTNDANLTTVSIAYP*
Ga0102831_10013963	F027487	N/A	MACFTALDYRNKSYPFVQTIADAAGITPVSYGCYDASSDAAKLYQFYVGLATIGGLTPVTENCFVQKTEDQQYYLTNEALAAALS*
Ga0102831_10013965	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRAINDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTVNNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNSDTAFNAGLAPFNEADPATWARLVRVPRYIKTVLENGCAYIPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCEVQNYIVPENNQDCYSCAGVGDIVVPS*
Ga0102831_10013969	F095350	N/A	MDSLRDLVSETIAIPATITRLTLAGLIFDHLLNIGRNFDSIRCIVLSDVLNQAIECASVNNRRKRELVTLDLILPIPAPDRCEIFVFQFHLAFARKIYFLIDMSRAFSSNKGIRRYGMQFPENLDDLGVELFCYAMTRGQYGRSYCTRHNISLSEFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWIYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQIGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARTNLASNNDKTFIGIGNPSAGDNPHTRWALPKDCSNFDSVSPDMDKWETGTGVCLFYNGMRSPNFAAHPDEPSPFPFLMDREKQQDMLKLCY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102831_1001396

Overview

Ecosystem & Geography

Associated Families

Sequences