NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115658_1026222

Scaffold Ga0115658_1026222


Overview

Basic Information
Taxon OID3300008629 Open in IMG/M
Scaffold IDGa0115658_1026222 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4156
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F081430Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0115658_10262223F000659AGAAGMIKFKQYLEEANSKYIVSKNPHDKKWYVMGHVGRNKWMPVSNGFKNKAQAQKWAKSQDKVDSAARGEISGV*
Ga0115658_10262228F081430AGGMLQFKEYLDEQVRWAGSLSDKLFDMGIGLTGLWLPMSTPIFRRIGLDDFRTTCFHVTDTEGYEGIKKMQGQKKSISAFFEMHGKYMSRGVQTQGGVILELDANILSAWREDVMSSPDKTGRRWIQLSYFGGMYRVQDDIDAMIGGDGKRNSLFELIKDLLKKYLPGQHAHKVTLYNATEKDLGKYWQNMGIWLRKEKDYRKIMGNLVKDYIDGVEKVMKAHVKKLQSIFRSYLNRRTTDTSWDEIIVNMVQIQKVHLLDSDAWHRSSSSGDPDEDDYMGYEDFLKKVKADGFKGKYWDSEMDLEIYIRKLVQSQAKK*
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