| Basic Information | |
|---|---|
| Taxon OID | 3300008629 Open in IMG/M |
| Scaffold ID | Ga0115658_1002141 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25421 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (64.10%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000659 | Metagenome / Metatranscriptome | 952 | Y |
| F009237 | Metagenome / Metatranscriptome | 321 | Y |
| F011337 | Metagenome | 292 | Y |
| F016590 | Metagenome | 246 | Y |
| F029553 | Metagenome / Metatranscriptome | 188 | Y |
| F055182 | Metagenome / Metatranscriptome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115658_100214112 | F009237 | N/A | MNKRLTKLKSLIDDGSVPTILEVRSKPKDYSYEDVVALDYGFVQNLYMGSGQFEKWFTYTGPKPIKLNDLIINPNEMIEILLDYYGIS* |
| Ga0115658_100214122 | F029553 | GGAG | MALTIEAIQERKVALEGDLVKLRDTISQLDAKRQELVGNMNALSGAVQQCDQFLVDIAEQEEPKIKKEK* |
| Ga0115658_100214128 | F016590 | GGAG | MYKMKTFKQYLREFAMQSPSDLVFDVPSGESGSLKIPISGPMFKRIWPDTIRSTVFHATDLKGLERLKKLEGGKNTISAFFSMMSRYMEKGIATEGGLVVEMDADVLISASSDIMSEVDKQGRRWVEMSWFANAQRYGVGPDFRKVEGDLSKLIEGLVTKHIPFGKSQTIQQTKHFAKDSGRYFDIWGNMKHHLKGDGKILRVVIKDYFDGVEKIIKKHKKVMESIFYGYAKSKRQTEDSWDEQLVNNIKIKKIHVLEVKSYEDDEYVVHDDVSSVGNWPIVDWGSSIELEVYTRQVVQKEIGK* |
| Ga0115658_100214129 | F000659 | N/A | MKTFKTYLKEVNSKYIVAKNPSDKKWYVMGHVGSNKWMPVSNGFKNKAQAQKWAKSQDTVDIAARGEMGDV* |
| Ga0115658_100214138 | F011337 | AGG | MKTFKHFLLEIGVDPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDFDGLGKLKGMQGGKRSISAFFNIDDIVIQTGIKSEGGYVIEMEADVLVASQDDISSQPDKTGRRWVTLSSLMNKPTDSDPGLGGGAKLKGMEKDIEKMLIKIIVDHSDITPEPNINKAWGYLGKSVGGKEKSLIIKDYIDGMEKTMKKHSKVLGTLLTAYTKKRIQEPDPDSGDKPMWDELVVNNFKIQKIHVSPEFSPDFAELEKGEGGERMYTFANKDKDIEGFPFELYYEVGDMVDYINRTVAKIKL* |
| Ga0115658_10021416 | F055182 | N/A | MPTYQYKCKNCEFEFEDTFKIDDRNIPIENPQKYGSCNSEGGESGTPCVLQIVPQFPSPISMRDSFRRHTSDGWKDRLKEIKRQNPGSNLDT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |