NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1042512

Scaffold Ga0114880_1042512


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1042512 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1965
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008936Metagenome325Y
F028110Metagenome192N

Sequences

Protein IDFamilyRBSSequence
Ga0114880_10425121F028110N/AITFSNVYNYIIAIHYTDEETRAIYDLILNADELLLMSSADIALRVANGTIEKYQDVIHHSAPQLIMELIRNHIPTEDAERFIDLPMAEQIAALNRLASDRIAVQLDPIQQAQQELLNGLV
Ga0114880_10425122F008936AGGAMASFDSLVNQKIKLFESVPDKLATAAIKTQAEIWRKIRPILDDMDVSAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRSFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFYGSGLDARFTQPFLEQLTTNIAARAPLREAVVALEGLVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGVEWYEYLGGEISTTRPFCEHREGKIFHKKEIEAWGDGKNSGGIRDIQDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPERKVPDTVKARARSEGYID*
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