Scaffold Ga0114880

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1001641 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13102
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13102

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F078706	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100164114	F001991	GAGG	MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSNGSPVDLTGATINASIIRRQLSNIRDSRYGLTFDIADYTPAPSPVSLTISNRVDAAGTFTLEIDESTWSVISTDPQLDINAENCVGFSGRIKISFPS
Ga0114880_10016414	F078706	N/A	MSKLGSALGKKYEDNRLSVLTRSFELGGHTFKVKVPSVSEIEAIYNYAKNPNLDEIEKTYQTLIEDIKNVEGIKEENNDIVIDGRSMKETATNKHILQYRITAYIKFLIGENGETLDQITYEDIEAEFPLAIQLTLVEKINEVISPEYKEIRSK*
Ga0114880_10016417	F000934	AGCAG	MSTLNQILAISESVGINDHRFIGQTLSRNQRISTSEILTVQPFMFDMKPMNYLLYSQNRTLLSTLRSADRQYEQYLNFGSTGWWNYIAYQGDMNSAQISACQYQTASANKTIVLGSLPSIASTAYIVKTGDFLQINRYAYIATADVQRGTGSTVNIPVHRTIMTTLTSPMDAVIGQYGITQSLGGNTYIGVTFPVILQEYPTYTFIPMTNDSFVTWNGSFKAIEAVL*
Ga0114880_10016418	F002085	AGAAG	MADNIISIQNTNNIRMADFVRVTTASATYRFATTPSVLTIPAVDSQPFDALGALVKIGDVQRDIKSTANETTITLVGLDTALLGWVLGHDIKGSLIEMWHGFFDNNNQLITTGGTGGLYKFFTGYISSFQISEQYMDEAKSYVGIITASASSIQIILQNRTAGRYTNNNAWQFWNNGDTSMNRVNFIETINYAFGKDN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114880_1001641

Overview

Ecosystem & Geography

Associated Families

Sequences