Scaffold Ga0114876

Basic Information
Taxon OID	3300008448 Open in IMG/M
Scaffold ID	Ga0114876_1003281 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10913
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10913

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F015330	Metagenome / Metatranscriptome	255	Y
F103134	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100328110	F003521	AGGA	MKSLVKNIRGYFNRRTRVIDSYKEAHVERRTLVIQNGEAASRLMLNEDFALMFNLYRFSMLERLEEADSDEKRIGNAYYVAGVRDFIDFVEKSEYLAKVALKKVET*
Ga0114876_100328113	F000857	GGA	MELNLNNEEAKVNEDYYTKGNLEAGVEGVLRRNDQLYNEVKSGTWSQTFKTKNLDYKVGAEDGVRYVQYTQHNVEAIKQYCKERREFYQAIGTTDNPFFAGTFEAMNLPKSIAHAICSKYFNNRPWELVKTEKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0114876_10032812	F015330	GGA	MSEVIKLKPKVGRPKSVVNKVTEYGALFNELNAERAAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVNNIIRDEESTMEESMDDFLESLRKV*
Ga0114876_10032814	F103134	GAGG	MSGYGRVINGGKQMSKGNANHINDKLSGFDGENKRREMVAGAVRQAFTVRHLSDQTTNNVSAGGKFKTVKEKDKVQPL*
Ga0114876_10032816	F001059	AGGA	MATYDIEALKADLPTAKELAQFVFDKTNGAISLDLIGKPKDDQYQVAKNALEGKKVPSEFLTGDNPYMDKKDEIPEDPLRVLPPRDPSLPSEDAQVHFFGATNMPHPLDPQSDKKVYIDFRKYENGLITYTITGPIEQVAVGEKKNRYGQTVPEKYTWIDPRTPEMVMRNADGTFTKEGRGLHTYCVGEKGSGIWSMIDRDMVTVTAKNIANPWA*
Ga0114876_10032817	F006264	N/A	MEDLSAKFQQRLSGQAEACARKALEWLQKDLQSGHMLNPQEVYYLAQAAQILLDIRDIYGEK*
Ga0114876_10032819	F004695	AGGA	MLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRMSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGKINFEFERFSESDEPGARQAAKMALHFLNSKNDSYQFVRDWAQDALLHKSGVVMVSPVREQITQYKEVEGTKDNLRSFEIMATEKGLTAKRQQMRRIDVDLQGVAQETMMPDESGMPTEPTGEEMQDAIKAHTIYRAKYKLTGYSTNIQVKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMITTAWLRRDIDNDGDEEIIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPMKHIYEFKAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKDLIYIVWKTMIQYSDDYNMQQLAEAMLPGSGFLDAKSMENFDFIDRNMINIDLALGFLSEENRLTRQQLITQAQAQFAQMVMQLDPSVPEMFAKARRPFEDTLYALGVKNCDAYLPTLEEASKMVQAQAAKGPGAAEQEIQSKVGLNQAKTKESETVSALNIKKAEDIDMDNYFEMEAMKAGKLSAVQVD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114876_1003281

Overview

Ecosystem & Geography

Associated Families

Sequences