Scaffold Ga0114364_1010856

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114364_1010856

Scaffold Ga0114364_1010856

Overview

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1010856 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4170
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F024312	Metagenome	206	N
F059001	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_101085610	F024312	N/A	MTPLTRLWDLREEVKFWNYKVDTSYPQNASEMINQLNAAKYKLKLHKQKHFPELLDQPKRNYIPYQMLADKFEVIENYLND*
Ga0114364_10108565	F059001	N/A	MNKLKTPQEKANERYAQESIKPMYAFIIVLIAFLITAILQNI*
Ga0114364_10108567	F008423	N/A	MSNLIYQEKQLKLHKRATILLELLKQAQGRQNLFEADLSEWRRGLDDTRTMISEEDLLIKIARMNDIQRRILKSYHYLILDLYTLTEDFMLPINLLHF*

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