NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114363_1033202

Scaffold Ga0114363_1033202


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1033202 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3138
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036677Metagenome169N
F048160Metagenome / Metatranscriptome148Y
F082379Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0114363_10332022F036677AGGMPAAIVVEGQFEKGYDQLRLGFLKGSNPSAFKRLMTFATLNAARTLQKPMRDKAPRGATGNLRKKVLARKARFNNPAAVVGIKGGRKGVFYGWLVVGGTGNRRTTPNGTFAVKGVAPRPFVEQVVKQRSNIDRAVESYSKTVAAYFNDEPFRNTILRFRRG*
Ga0114363_10332023F048160AGGMALGQSIAPPPEIIFHILGAKFGMWPEQVASLPIDEVLLHWMIHAEMQPKGK*
Ga0114363_10332024F082379AGGAGGMDTVKITLEGDFAGWTAELRKQVSARILLDLESGDSQRSLVAFSKLVVTHNFKGLDGKAVDDVLDAPIDALTQMLEAWGKANQPDPK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.