| Basic Information | |
|---|---|
| Taxon OID | 3300008266 Open in IMG/M |
| Scaffold ID | Ga0114363_1005696 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6324 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010315 | Metagenome | 305 | Y |
| F012661 | Metagenome | 278 | Y |
| F062704 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114363_100569610 | F012661 | AGG | MESKPKKRTPKPEGKRGQVVFYSEQEKKALSHIGSGSVAEGARISVRWAAHFWRVGLRPDHDLNHVGICLFVDDEFADEL* |
| Ga0114363_100569612 | F062704 | GAGG | MTQTQALTQALVLAITAPDDQKAQMAIDLSVELAMRLNAADVERCKADALLILEMA* |
| Ga0114363_100569614 | F010315 | AGG | MDNLFEEFQGADVERLADCLIAIRKAGLKVDKYTQAGVNQSSGNVWVWSESWAGCVACSIGFNVFWVYSCRECGEEFEFETYAELEQFSEKNIDDCTMCRTEEVTA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |