NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114349_1025468

Scaffold Ga0114349_1025468


Overview

Basic Information
Taxon OID3300008263 Open in IMG/M
Scaffold IDGa0114349_1025468 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5187
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F003603Metagenome / Metatranscriptome477Y
F007470Metagenome / Metatranscriptome350Y
F007644Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0114349_102546810F007644GGAGGLTKSSRFLEYMKLHLISLNQDMESHDNPEIKIHLDGQIVATRHLLSVATDIMNNSNERYNND*
Ga0114349_102546815F001019AGGAGGMSNYGPSLEILEVAYDVSPGGIRTFEVYDKGDNYDIMDIPIYETESLTEAVQYCYNLDKDFIVRTYAEWEMREMLDNL*
Ga0114349_102546818F003603AGGCGGMKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRIVEVVAWIIEKQAERYRREVANDGTVCEGLIIANHLDKVIDKIKITNELKSVQLPITPKERGEFVKSLPEVKEQNYRYSW
Ga0114349_10254683F007470GGAGMDYQDGFEDGVKFAREVIVTNIRLWAETSEDGNIRLWAETSEDGPAYDDIADRLEFGTVDYDL*
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