NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1026896

Scaffold Ga0114336_1026896


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1026896 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3245
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003379Metagenome / Metatranscriptome490Y
F004431Metagenome / Metatranscriptome438Y
F009143Metagenome / Metatranscriptome322Y
F093873Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0114336_10268962F003379GGAMKKIWALITLTATAVFSGIALSKFLKWAGQQEDFFDFDLNEDIDNEQL*
Ga0114336_10268965F093873AGGAMFSLKYTVGLGSTTLLVPSEEYANEYLDLVSQTRVIDTVTLTELPNYKPSKRVVYATTRSWE*
Ga0114336_10268967F004431AGGAMTITYSIWDGAQLLGVNFTATSADEMNKVVADLQKVSKNVVAHMRKVEM*
Ga0114336_10268968F009143AGGTGGMMTKWDTIQADVADAYVYLEEEEAYNKALAEGLDLRLSEYEEEEMSSLTLDWDN*
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