Scaffold Ga0114841_1008966

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114841_1008966

Scaffold Ga0114841_1008966

Overview

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1008966 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6079
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001182	Metagenome	755	Y
F003407	Metagenome / Metatranscriptome	488	Y
F026823	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10089664	F026823	GGAG	MARGLKPRVEPAIEAALQKKGNLSDLDLAKLCFCARRSAARILFDLHRHELVYISGYTRVSANGQWRPLWSWGEGVDAIAPGTATK*
Ga0114841_10089665	F003407	GGA	MTNDLPPAIDACLDLVNDLLHPEVYGHAIPSEVKARAFVVKTMLERLKSRMESGTWPEA*
Ga0114841_10089666	F001182	N/A	HYFWWHWRDAGLEGLSMSKTPSCPRGLFQFDCTVEDVDLICFLEYSPEEKGSVDSLGSPYEPDLEEGMMLNNAYIAGTDVDIAHMILQSMVDHIEVSALEKYNDQ*

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