| Basic Information | |
|---|---|
| Taxon OID | 3300008220 Open in IMG/M |
| Scaffold ID | Ga0114910_1055794 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1253 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 43.02 | Long. (o) | 8.37 | Alt. (m) | Depth (m) | 2641 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013187 | Metagenome | 273 | Y |
| F021207 | Metagenome | 220 | Y |
| F029779 | Metagenome | 187 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114910_10557941 | F021207 | N/A | QVNIQHFATLVQEVDIYKYSQEEYVNIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVIWNKDVI* |
| Ga0114910_10557944 | F013187 | GGAGG | MPTKKIKKKPKRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKDMQGG* |
| Ga0114910_10557946 | F029779 | AGGAG | MNYEEKYKQLCEALVGIDATERYTHEDILSYVYNLKNTEEKFYDSKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |