| Basic Information | |
|---|---|
| Taxon OID | 3300008216 Open in IMG/M |
| Scaffold ID | Ga0114898_1004197 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6685 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000479 | Metagenome / Metatranscriptome | 1092 | Y |
| F038417 | Metagenome / Metatranscriptome | 166 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114898_100419710 | F000479 | AGGA | MTKAVNILSVLEKAHQGKNMSKKAKMQIADAYGRALIMQKIIADFLKVNRQLLIDMGISENANLLHGKDYSLHISQKIGAKIDTALVKEKLGELEYHKCKVPTQYKTIQAMAIDDKRVAIDSGRYSTRELSDFQLAV* |
| Ga0114898_10041978 | F038417 | N/A | MEKDMVLSDENMDMVCATLKGITEALNRNNATLEKILGHYNSVVPPMKEGADRANRINREAEIQNGGGYIEN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |