Basic Information | |
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Taxon OID | 3300008120 Open in IMG/M |
Scaffold ID | Ga0114355_1045296 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2045 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024109 | Metagenome / Metatranscriptome | 207 | Y |
F034853 | Metagenome / Metatranscriptome | 173 | Y |
F047560 | Metagenome / Metatranscriptome | 149 | Y |
F058787 | Metagenome / Metatranscriptome | 134 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114355_10452961 | F047560 | AGAAGG | MANVVVSAIATWNGKALNKGKKDVSAFDKQVNKLGKTFAGVFGAQQLFQFSKRAVQAFAADEKAAKSLEVQLRNTGFA |
Ga0114355_10452962 | F034853 | N/A | MPGLTSQPKIKGVRGGGRKTKGRLIYKAWAQDSGKVYQAVLGAINSTAIKFNKSTEIKKAA* |
Ga0114355_10452963 | F058787 | AGGAG | MPAEAVGVKDVLAGLKFIDKDLQDRIRTAIDPLMRNVAAKARSFVPGNAEVLSGWTKEPNPNINYRPFPKYDAGTVKAGIGYNSGDNRTFKNGFKVSNYVYNVSAPGRI* |
Ga0114355_10452967 | F024109 | N/A | IVAVVTKLAASNLVYNISSVSAPAITNAASGDLLTSEITVSILTSWS* |
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