NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1019385

Scaffold Ga0114347_1019385


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1019385 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3236
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F004666Metagenome / Metatranscriptome428Y
F007468Metagenome / Metatranscriptome350Y
F014250Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_10193853F004666AGGAMTTKREYLTSKGITVGRRGRFSGAAKVALQEAEKAGIKFSAEKPAK*
Ga0114347_10193856F014250N/AMYSDILDPRLQKLIDLGESGTDILHGELKNLMLEAETQLGLAQAQEDETEEAMDSMERTYWEGQLDALSHVYGLTYQLAFAITDRKNK*
Ga0114347_10193857F007468AGGAMESVYVIRSSKLIEYMKLHLISLNQDLDKDLNVESKINIQGQIMATEHLLSVVEDIMVS*
Ga0114347_10193859F000868AGGCGGMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQFYADFRFAEMCESNYLKGRFNQFYDLTPDDEHYIEWDEEA*
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