NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114346_1048747

Scaffold Ga0114346_1048747


Overview

Basic Information
Taxon OID3300008113 Open in IMG/M
Scaffold IDGa0114346_1048747 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F004666Metagenome / Metatranscriptome428Y
F024786Metagenome / Metatranscriptome204Y
F068492Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0114346_10487471F004666AGGAMTTKREYLASKGITVGRRGRFSSAANKALQDAAAQGVVFQAEK
Ga0114346_10487472F024786N/AMPNGRVESLPVYRVFGTKYTNYYTIIEAADQFEAVDKANALPELEWNSIPTDDVIEATDVYLNEDTSEELQLNI*
Ga0114346_10487475F068492GAGGMMNTTYLEPRLQKLIDLGETGTNILHGELKNLMLQAEQQYEEAKQIEEYNDYSDAMESMERKYWEGQCDALAHVYALTYQLSFAIAERSKR*
Ga0114346_10487478F000868GAGGMSDPYGTIRIYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK*
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