NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114346_1013582

Scaffold Ga0114346_1013582


Overview

Basic Information
Taxon OID3300008113 Open in IMG/M
Scaffold IDGa0114346_1013582 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8127
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F010618Metagenome301N
F021296Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0114346_101358211F002406N/AMENLKWIRAMADRLRDELSKEYDDETKDLIIRAFMQGLFQQPGIVEELKSSSLIESDYFEGEDEATN*
Ga0114346_101358212F010618GAGGMSIQELIKKLQEIEAKYPQYSQDTEVVMAVHSENDFNPEVQIDYIDEVVHQALDTHSGYICRIVLCGEYYQED*
Ga0114346_10135824F021296N/AMEEPIMSDNKFSFLELDDAPVKVQPNQSVFTAVQSLQPKDGATAKQDANGNWVNAIGLQSTATHRHVAKVWQDKCSPLADFIETVKEQSKTKFDYVKPESDVRLQDASTLTNGMTLTKSGLNSLRSFTDIPSSMVSFLEERGYDEDLTRFVNSELNRREQNWKDDGKESREFRVRVRQDDNGNDAVRAVVSGRYGVIDNHEAMEMIANSLPSLSDALASHISNDGDDIFGNVLLPDYMKSEPDSDYGVGIAFRNSEIKNSTF
Ga0114346_10135829F002398AGGMTTLISSLIILSLSLEPIKNFVSLKTYISENAKIHCHVYFINEEIPDFPRVNIIEKSQGDFFAYLDTIGIEHTKLGSYYFFQKKQQ*
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