NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1001356

Scaffold Ga0114344_1001356


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1001356 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21595
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (62.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F007163Metagenome / Metatranscriptome356Y
F034468Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0114344_100135612F034468GAGGMNKPFYITYKLVEEMLQKHDVHCVFELDAPMQIFTRLMSSEFYTTQDVRGREAEFRGYWAQSEIYCPHEGIDRRSEYGMEIV*
Ga0114344_100135613F007163N/AMLTIGANMTIEDLQYIFEYQIEEGTEKLYFMLTDGERLPVIQRHPADDLHGLLPMLDSFQYTGHNVMPRFKK*
Ga0114344_10013568F001008GGAGMSRAKHKPYQWIDGETADRITSLNLKDYRAYLKKELAQWKKNPRTDDNPDGYWMHPEDVSGNMRRIEALNLIIKDFIETSDEIK*
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