| Basic Information | |
|---|---|
| Taxon OID | 3300008110 Open in IMG/M |
| Scaffold ID | Ga0114343_1012851 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3965 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-3-10 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002398 | Metagenome / Metatranscriptome | 563 | Y |
| F002406 | Metagenome | 562 | Y |
| F006182 | Metagenome | 379 | Y |
| F019834 | Metagenome | 227 | N |
| F072286 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114343_101285111 | F006182 | GAGG | LKINFRVNGTMEVPDDAIKHYDVAGELYALEFNDIMYMLQVCVVAEAGAGGFDILHQFEEMENHNIKNVHYDDVNFVED* |
| Ga0114343_10128513 | F072286 | N/A | MELENPTTEKTFVYYITERHGYVETTLSYLRRLKISKLISKFSKHMRGKVYIEEDGDLKLFLKRLAYDNIEVTLKEDYTKPQSFFDNLLCLDDYTWTNEQFDKFSTNWSIDFKCYFSKQDDIKHVRDGIFETKDGKQLKIYPTVYLDGKPLSPAQAKKIGFEPQSIVTNDLEENYD* |
| Ga0114343_10128515 | F002398 | AGG | MLPLLHIFLLTSVDPIKNFVSLKTYISENAKVHCQVYFIDESIADYPRVKLIEKSRVDFFAYLDTIGIEHTPVGGYFFFRKKPNNE* |
| Ga0114343_10128517 | F019834 | GAGG | MKELKFTVTGTIFVPDDIEYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHDIGFFEYEDAFFED* |
| Ga0114343_10128518 | F002406 | GAG | MEDLKWISAMSDRLRDTLSSEYDDETKDLIIRAFMNGLFKNPGLVEDLKSSSLIESDYFEDEEDEE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |