NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10015895

Scaffold Ga0114341_10015895


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10015895 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5501
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012669Metagenome / Metatranscriptome278Y
F045700Metagenome / Metatranscriptome152Y
F074576Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1001589513F045700GGAMNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEILDSKASKIIESNIEHNFPDYYERPHTKRNKG*
Ga0114341_1001589514F074576AGGAMEFRGKQRQLNDRKVIEAYNPATNQTFFYSFDEDFFWFPGQIPDWKLKNTI*
Ga0114341_1001589516F012669GGAMTEQIYMNLKDAVKRPVFDVKKINRENPRFKHLVDSYQRWNSDNDIDEPRSTYENDIIECLGHYDLDGFALAQHLKDYVYVEPDSELVHILDDVLFVKSSLEREMLNQWVKENFLTISDDVVGKKVNAKQGFRKYENHYITGIKPETYQVTISDNINGKGGYIVGFENVTFVD*
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