Scaffold Ga0114340_1009617

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114340_1009617

Scaffold Ga0114340_1009617

Overview

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1009617 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4858
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008552	Metagenome	331	Y
F024557	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10096177	F008552	N/A	MIISFEASANVDTTLFGYFSMQYDPEFFNDIKENLIEISKDDTLSFKLDPEEIKLLQGSYENVKRIICISDVEQNKFTNVFKRKFDTSGFKKFNNVKLHIDKDYFYFTGHHENQNGTKPVEFQSLNFDVRFIETLEHKYKSMVN*
Ga0114340_10096178	F024557	N/A	MNSHVWIYFSKTGVGYELVGTDVISGIDAFIHGDATFLVEYSHSDMMNDMHFFIYEWDNSQKKRKTVFESYKIELVLMGIARNIDSLPLSVQQKILSMYVNEEEDLVLEKNANS*
Ga0114340_10096179	F001561	N/A	MQTPEQKLKQLNKTIETLWHGVSDTKDGDYPRIVSLYKEVLKINYKDRDAWENMIWLMWSLAVNNKDTAWLFEAEKYVKRYLSLLPNGYRSHEYIGQFYRTMYIDERLAVRHYESAIRYPDAIPSTYHSLIALCIKIGDKVKARDYCVLALRRFKNDSYSLMRLKQLDAR*

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