NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1007042

Scaffold Ga0114340_1007042


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1007042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6441
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003542Metagenome / Metatranscriptome480Y
F006303Metagenome / Metatranscriptome376Y
F018718Metagenome / Metatranscriptome233Y
F040595Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100704212F006303N/AMLNWIKEKLVPSYKLNNKETLILDVITNMCEQTDTDILMAPLSGRYYLVNKRLEYWIRVFDDGVTITNHKFTFSNTSPQGFQHMVIKVVEAAIEKSRDEFETAVFQNEVELLENIVSNIKHKK*
Ga0114340_100704214F040595N/AMSKFQVTPALIGKYINQVLWSDVNPVGKIIGIKGKTKVIIQPVEAGPNKAKMEFIPGGFAGHCYNQSEQEYDFVEVGEPFEAPISNSSLRGRMWRIGDSPRKYYDYNF*
Ga0114340_10070425F018718N/AMNIREFYLESYPTDELGVELNETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWIN*
Ga0114340_10070427F003542N/AMIKNYELFESKIGYDSQNKGYLIRVYDLLVEEMNHNPAPTWTGIMVKMLGDNPKRCNPSSYYSSVRRCLKEIKVCSYDTHKRCMVKGPNWDRFVSSEDWSWFIMKTGSCERSKVVK*
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