| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1000423 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50509 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (46.15%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000345 | Metagenome / Metatranscriptome | 1253 | Y |
| F000744 | Metagenome / Metatranscriptome | 909 | Y |
| F001968 | Metagenome / Metatranscriptome | 610 | Y |
| F002243 | Metagenome / Metatranscriptome | 578 | Y |
| F004208 | Metagenome / Metatranscriptome | 448 | Y |
| F004314 | Metagenome / Metatranscriptome | 444 | Y |
| F004546 | Metagenome / Metatranscriptome | 433 | Y |
| F004898 | Metagenome / Metatranscriptome | 419 | Y |
| F007569 | Metagenome / Metatranscriptome | 348 | Y |
| F027748 | Metagenome / Metatranscriptome | 193 | Y |
| F037598 | Metagenome / Metatranscriptome | 167 | Y |
| F048268 | Metagenome / Metatranscriptome | 148 | Y |
| F054801 | Metagenome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_100042319 | F037598 | N/A | MTRTNVLPLDLCTVTLTEAQWSTIRTAVLCLAVDCRTAGKGTDADYYLNAYNTLKQAMGMED* |
| Ga0114340_100042324 | F027748 | N/A | MSTATRLTANQAKSAIYDLADDFSWETVAKEMIARMSGDEARDFLEDFQRLYAD* |
| Ga0114340_100042333 | F001968 | GAG | MFDELWQEIQDMPGEIFDMDIPELREDNKFDVNEYLNANYDY* |
| Ga0114340_100042336 | F004314 | N/A | MYDDYDFDYSYTGNDYADLDEHYTLDVRDLDEDYARDGQDYQDLAYRHYA* |
| Ga0114340_100042347 | F002243 | GGAG | MPDFPTLQSKDGTMLVGYYPLQDSYGDISTEWCVQILSWKGIDRISKKYLNRVEKTLAIRDRLAHDYVVTGDNQNSPQEGNPFHGAC* |
| Ga0114340_100042348 | F000744 | GGA | MKDVNVNLNVQEIGILLSALQDLDNVDEIRLSREYGSASALYNKLYSLWERMDTSETGLRYDVVPSF* |
| Ga0114340_100042352 | F048268 | N/A | MYLSTQSVSKIADALKPAVLEYIHADEGYVEYMQTAVIEGIRNTMGDMDEDLLFELGMLIFDRIELK* |
| Ga0114340_100042357 | F004898 | GAGG | MDLSELIEELREIEIYGSEPSDWMGYMGSDDYWVPDSELAY* |
| Ga0114340_100042367 | F000345 | GGA | MTEESKKPNDFGKAMQEWWDSDAFKKFQKANKEAKERAIGKYFMLSEEDRIDMVEAITHIMCKAEREGTSHRGLQSELGIYPGGFWVDHLMDVHNALWSYYHDQKKEQELKDDLDALEDFMK* |
| Ga0114340_100042377 | F004546 | GAG | MDYTEEFPFDQFPWKLIHKDGKETRKCYFQTEEHRKKHIDRYNLKKKDIQLSYKYDN* |
| Ga0114340_100042379 | F007569 | GGGGG | MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHQCGEILDELFDVVYTQKQEQPT* |
| Ga0114340_100042386 | F004208 | GAGG | MTYSLNQEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMVVFDDYFTNFCESDNNGGHCVYERDATDFTDFVRFKLGIDDYDAVDVDEVLK* |
| Ga0114340_100042387 | F054801 | N/A | MTYKVRYNGFGPYKDKFEINQIFTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |