| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1000202 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44042 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (71.19%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F002489 | Metagenome / Metatranscriptome | 554 | Y |
| F003379 | Metagenome / Metatranscriptome | 490 | Y |
| F003643 | Metagenome / Metatranscriptome | 475 | N |
| F006841 | Metagenome / Metatranscriptome | 363 | Y |
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F051930 | Metagenome / Metatranscriptome | 143 | Y |
| F099281 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_100020213 | F003379 | AGGA | MKKLSALVMLIATAILSGVALSKFLNWAGQIEIFDFDLDEDIDNEEF* |
| Ga0114340_10002022 | F000447 | GAGG | MGYIEIFRMDQNGAGWVDLSEATPDEMFNIELGLLNEGALFTSPEAE* |
| Ga0114340_100020221 | F002489 | GAGG | MQEDQNNNNDSTNLEDNLPMVSYIMLHRIYDLLTLIASKVAGSEDTSKMVEYHQAGYLLGPMPSYNPGEQNE* |
| Ga0114340_100020222 | F051930 | N/A | MSKEGLVEKFLCPVDQSLLFSNQDIEENIFLYCLSCKYKKNIGFNTYKDIVKLVEGQLKNGRLSK* |
| Ga0114340_100020225 | F003643 | AGGAGG | MKQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLLMGGFAATAPVILKALNPNEKSFGFTTK* |
| Ga0114340_100020234 | F099281 | GGA | MATVDKNFKVKNGLNVAGAATFDAAVNVDNLVLNSTPLAFDSSTGRLKLQIDGVWKEIALLQDAAEDLTAITFMDIGLAIDYNGQPVYTVFANGVNTTATKFADGGAYSTDTYSMTFDSGAIA* |
| Ga0114340_100020253 | F001106 | AGGAG | MSFDTLKVSDLKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAVEKDTEEIEILPKFDPKSQPENTILVRMTRDNMRYDIHGKTFTKNHPFVAMSEEDAQKIFDKEEGFRLATPKEVQDFYN* |
| Ga0114340_100020256 | F012456 | AGG | MAGSVPGIIKDSTVAQISAFLYYEAAVMSKLTTHSAFKNLFKTTIFNQIEKDFGLYIDSQARVKPRSLHHVYEWNKAGSPTSRLFTLSRIDTEGLSFRINYDFKISKSSVPSKNKKQKKGYVFANKASVMESGMPVIIRPRSAERLVFEIDGATVFMPKGTSVVVKRPGGTQATNQFSLSYGRFFGGQLVNNSIKSSGLQQIFGSRIKKAMGVPMNIKKVQYSFSAGKIRTQADAALHASFGGSL* |
| Ga0114340_100020257 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWNELKEAKIFEASDYYSDSSDTEIIPIIPVQQSPEIDQFLNGKKHIVYDKIGMSFEDIWLIACEKVLFTIYSTDITEVYEIRNLIMDLFRRMDESARDANLSRSTGKIIFHSIHVVETSPIEPSMELQGYMSADIILEVKYSRTVGQDGRFD* |
| Ga0114340_100020259 | F006841 | AGGAGG | MATTVYDVEEIQLQNGATVKLKPLTIKELRKFMKVIARTQEVTTEDETLSILIEACAVALEKQLPELVKDIDAFEDTLDVPTINRILEICGGIKMDDPNQLAAAVLAGQN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |