NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000149

Scaffold Ga0114340_1000149


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000149 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50095
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (71.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F007524Metagenome / Metatranscriptome349Y
F032651Metagenome / Metatranscriptome179Y
F036696Metagenome169Y
F099274Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100014935F099274AGGAGMAKVDGQVVKVGDWVSFKCDIEQSGRITRIDGDRLFLEAGPNGFEGGYIGGQEMTVQSARDCWLEG*
Ga0114340_100014936F032651N/AVYTYTKAIGAKMKKVKVINIEAAGYYTSEYASGSTVKVTLQRGKEIASCDEILIWEEEYAEDCFDEWMDCALAGEAGYTYTEGV*
Ga0114340_100014937F007524GGAGGMSNIKTHVVAINRLMLPLIATVGQFSKDEDDLSMFKMHAGDVAHNISALEEFNETFDVEQLHASIIYQDTLPREHFYAVLKYIEDNALIPERKYACI*
Ga0114340_100014938F036696AGGAMSKELNKRIADAFDKIYSKGDAGLDYMDGHVELDADLMQYFYDDAVETLSKADKTRLADMLELVAADMEIDLEVL*
Ga0114340_100014949F000652AGGAGMKVQVTTIINQWLEVPEGWDRMDVFDFLAEHQSFRTAFQGVSNEDQTARIIDLHVVEEEVTEMGEVAYDD*
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