Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000035 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	108590
Total Scaffold Genes	170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	125 (73.53%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

108590

Total Scaffold Genes

170 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

125 (73.53%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F003688	Metagenome / Metatranscriptome	473	Y
F006385	Metagenome / Metatranscriptome	374	Y
F009530	Metagenome / Metatranscriptome	316	Y
F009885	Metagenome / Metatranscriptome	311	Y
F017301	Metagenome / Metatranscriptome	241	Y
F020171	Metagenome / Metatranscriptome	225	Y
F027847	Metagenome / Metatranscriptome	193	Y
F029106	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000035102	F009885	N/A	MTTTDWAQFILALLSIGTVIVGSIRWYIKIQVAPIAEAVEDIRSETKTNGGSSMRDEIKAIKVEQENARDKRKATSDKLDHMYDILLDYIAKSK*
Ga0114340_1000035165	F000264	AGGA	MMAGKLYTNEVWLRKRYLVDKKTPEEIAKESGASIETIYVYLAKFGLRKSRR*
Ga0114340_1000035166	F029106	GAG	MNRMQKLLIGLAVAGAVGITFVATSLRGMPEAFDWEDDEEKNYE*
Ga0114340_100003529	F003688	N/A	MYTDNMRRAFHSIISPKNFQVELIDNEHFLTIKLNEYHFLKMGHNEKIEALQYVVQLKKALEMEGAIVLVSREAIK*
Ga0114340_100003533	F017301	AGGAGG	MNTTQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAALAPVAIRAINPNDKAFGILPDASSVEKALKAAKPPVKKASTVREAAAKKAKSSGGGKNNQVN*
Ga0114340_100003569	F020171	AGGAG	MEQFIDTLAEHITGAIQQEIAEELFDQWSYNNLEEGEDYAENKFMQYASDELKQQYNEYYGYIEGDEFLL*
Ga0114340_100003583	F006385	GGAG	LILDTGTLIAIVIALGGSLTVMCLFWKQNIAQQKEIRRLQILLRTERLK*
Ga0114340_100003595	F027847	AGG	MNPFTALQDFLDENVAYGLIGAFVGVAIAVILCFTLGA*
Ga0114340_100003597	F009530	AGAAG	MEIKYSIWQGSKLISIDNIAHEIKAIDHLIASLNESELGKVKKFSANVMDIKVNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000035

Overview

Ecosystem & Geography

Associated Families

Sequences