NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0108970_10711030

Scaffold Ga0108970_10711030


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10711030 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3299
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001900Metagenome / Metatranscriptome620Y
F005054Metagenome / Metatranscriptome413Y

Sequences

Protein IDFamilyRBSSequence
Ga0108970_107110301F001900GGAGLDNSNLLVQASSGLERLMGGTGPGGTLKDSTVAQVSAYVYYQANVIAKLTSNKQFQNAFTTTIFEQIDKDFGNYVDALARTRPKSLHHVYEWKKVGNPTARLFKINKISEQGLSFRVNYEFKPSRSMVPAGKNKRRHMFVNKAAVMEEGLPLVIRPKNSERLVFEYNGETVFMPKGASVTVKRPGGSAARNQFALAYSRFFSGQLVNTSIKSSGFQS
Ga0108970_107110303F005054AGGMAEVLIRTQSPITHQIFWNGEVTTPDTTPIAKLFDITNDPAINPAINPTTLLTSLVSVADENNPGSYTVYIPYQFTDRNRTLRLQWEYTIGTTHVIKSDEVYVVTPYVDFNHAQDLGFSIDSSDPNYRSYKDLIRAERYARKQIEQYTGQSFYLYDDVVVVYGYDSDILPLPSKIHTLHELYARDVLLLDTINEIDNWNYPVEITPTGYGIKINRANMLDNTVYTANGMVPPTINDYGSGIFQAGVPYKVQGKFGWEKVPDEVELAGIELMKDYFAKDTVWRNKYVKTISTFDWDFEFTSDANAGTGNAYADKLLAEYVLVTKVEII*
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