NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0108970_10584714

Scaffold Ga0108970_10584714


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10584714 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4125
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001807Metagenome / Metatranscriptome631Y
F003601Metagenome / Metatranscriptome477Y
F103180Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0108970_105847142F003601GGAMDYTDDQLLAMAMANIGEYIHDNSPQYILIEDDPRNEDDYDTWEYGTEPLPHDHTWQHASIDIQSTEVQ*
Ga0108970_105847144F103180N/AMINFYADIETKANHHSTMIGFSLEFKRWYVVLRGPKGRVYLAFGFAKHMRVPRRWRMQPTTLEQCIGTWPGDETDQELLDTLKNIR*
Ga0108970_105847146F001807GGAGMTVLAIEDTHFTQTHVTVTAVVDEMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDPQWQLVERD*
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