NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105748_10073898

Scaffold Ga0105748_10073898


Overview

Basic Information
Taxon OID3300007992 Open in IMG/M
Scaffold IDGa0105748_10073898 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1341
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.235Long. (o)-123.9123Alt. (m)Depth (m)10.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009636Metagenome / Metatranscriptome315Y
F019391Metagenome / Metatranscriptome230Y
F051968Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0105748_100738982F009636N/AMGSVIMGYFYQDWKEKKMFVENTDGQFVMNFGEAEKSMIQNLEDAVINLTEGASDEKRMAIGYMEYLADCLKRGKLEVKWNIS*
Ga0105748_100738983F051968AGGAGMNIEKVTNMMCDFVAYVDDFYNEKSGIYPIKGMTDMMVINAVQKHVANVGMDFCADSVDREWVRDIILADNDLKWGV*
Ga0105748_100738984F019391GAGGMTNETIFIAANNGGLEIYKGVGNLIAGNIKTAKTFKYMMDAHHIDPDVDTIYTTSDMDFADECGFDHYDDARILMEEGLKLMEMTKEY*
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