NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105746_1002571

Scaffold Ga0105746_1002571


Overview

Basic Information
Taxon OID3300007973 Open in IMG/M
Scaffold IDGa0105746_1002571 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4890
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2357Long. (o)-123.9153Alt. (m)Depth (m)1.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F011742Metagenome287N
F020138Metagenome225Y
F036230Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0105746_100257110F036230GAGGMTQELKVGDIVQVSPDKEMFGGCMVVVTELKSFGIQGYVQSAGVPGQQYIRLNFNDFEPTGGKAIWVVAHD*
Ga0105746_10025716F020138AGGMNQQQINRLNAFWQDVEAHKALNPSSPESALVILKSVALDALLAAQDIEQIGVNDDTR*
Ga0105746_10025718F011742GGAMTTIEFVPFEWVDDDFNPDIDRIEVDYQWHEADDSVGLIAYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIADERT*
Ga0105746_10025719F002764AGGAGMKEPEDEAFEDLAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTAYVRGMKK*
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